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Molecular Dynamics Inc visual molecular dynamics (vmd) 1.9.3
Visual Molecular Dynamics (Vmd) 1.9.3, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+molecular+dynamics+(vmd)+1%2E9%2E3/visual+molecular+dynamics/pm40222188-94-5-6
Average 90 stars, based on 1 article reviews
visual molecular dynamics (vmd) 1.9.3 - by Bioz Stars, 2026-09
90/100 stars

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other:

Article Title: In situ self-cleaning removal of emerging organic contaminants with covalent organic framework armed with arylbiguanide.
Article Snippet: • A hydrophilic COF armed with arylbiguanide was first constructed.. • The ex situ regeneration limitation in the practical application of COFs was


Article Title: Degradation of microplastics by electrocoagulation technology: Combination oxidation and flocculation effects.
Article Snippet: • Oxidation effect also contributes to removing MPs during electrocoagulation.. • MPs’ hydrophilicity significantly affects their abatement efficiency.. • Both OH and SO4 could be generated during electrocoagulation.

Article Title: Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape
Article Snippet: The structures of the complexes were prepared in Visual Molecular Dynamics (VMD 1.9.3) [ ] with the CHARMM-GUI web server [ , ] using the Solutions Builder tool.


Article Title: Integrative Computational Modeling of Distinct Binding Mechanisms for Broadly Neutralizing Antibodies Targeting SARS-CoV-2 Spike Omicron Variants: Balance of Evolutionary and Dynamic Adaptability in Shaping Molecular Determinants of Immune Escape.
Article Snippet: The structures of the complexes were prepared in Visual Molecular Dynamics (VMD 1.9.3) [79] with the CHARMM-GUI web server [80,81] using the Solutions Builder tool.

Generated:

Article Title: Supporting Information for Scribble scrambles parathyroid hormone receptor interactions to regulate phosphate and vitamin D homeostasis
Article Snippet: .. The movie was generated using Visual Molecular Dynamics (VMD 1.9.3). ..

Diffusion-based Assay:

Article Title: Adding a Twist to Lateral Flow Immunoassays: A Direct Replacement of Antibodies with Helical Affibodies, from Selection to Application.
Article Snippet: .. Visual Molecular Dynamics (VMD) 1.9.3 was used to visualize and analyze the final combined 150 ns of equilibrated trajectories.58 Cluster analysis (cutoff value of 0.25 nm) was used to obtain representative median structures of AffiAA and Affi-BB in aqueous solutions.59 Principal Component Analysis (PCA) was applied to identify concerted motions of the dimeric affibodies adsorbed on the Au(111) surface, as described in an earlier study.60 The robustness of each principal component was evaluated using the cosine value calculation where low values indicate essential motions and high values indicate random diffusion of molecules.61 To quantify the Gibbs free energy of protein−protein complexes, MMPBSA was computed as previously described,62,63 with a value of 20 for the solute dielectric constant.64 Calculations were performed on the last equilibrated 10 ns, with 2000 bootstrap iterations.65 Hydrogen bonding analysis, in the affibody-RBD complexes was also performed on the last 10 ns of the equilibrated trajectories. ..



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Molecular Dynamics Inc visual molecular dynamics (vmd) 1.9.3
Visual Molecular Dynamics (Vmd) 1.9.3, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/visual+molecular+dynamics+(vmd)+1%2E9%2E3/visual+molecular+dynamics/pm40222188-94-5-6
Average 90 stars, based on 1 article reviews
visual molecular dynamics (vmd) 1.9.3 - by Bioz Stars, 2026-09
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Molecular Dynamics Inc visual molecular dynamics vmd 1.9.3
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Molecular Dynamics Inc visual molecular dynamics software vmd 1.9.3
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Molecular Dynamics Inc visual molecular dynamics (vmd) software version 1.9.3
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